Full list of publications on Google Scholar.
Carey MA, Medlock GL, Alam M, Kabir M, Uddin MJ, Nayak U, Papin JA, Faruque ASG, Haque R, Petri WA, Jr., Gilchrist CA (2021). Megasphaera in the stool microbiota is negatively associated with diarrheal cryptosporidiosis. Clinical Infectious Diseases. https://doi.org/10.1093/cid/ciab207.
Carey MA, Dräger A, Beber ME, Papin JA , Yurkovich JT (2020). Community standards to facilitate development and address challenges in metabolic modeling. Molecular Systems Biology. https://doi.org/10.15252/msb.20199235.
Carey MA, Steiner KL, Petri, WA, Jr. (2020). Ten Simple Rules for reading a scientific paper. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1008032 (corresponding author) - over 62,000 views since publication on July 30th, 2020
Carey MA, Untaroiu AM, Guler JL, Papin JA (2019). Computational predictions of metabolic drug targets in Chloroquine resistant Plasmodium falciparum for combination therapies. BMC Bioinformatics. https://doi.org/10.1186/s12859-019-2756-y - co-first authors with undergraduate mentee
Huckaby AC, Granum CS, Carey MA, Szlachta L, Al-Barghouthi B, Wang Y, Guler JL (2018. Complex DNA structures trigger copy number variation across the Plasmodium falciparum genome. Nucleic Acids Research. https://doi.org/10.1093/nar/gky1268
Moutinho MJ, Neubert BC, Jenior ML, Carey MA, Medlock GL, Kolling GL, Papin JA (2019). Functional Anabolic Network Analysis of Human-associated Lactobacillus Strains. BioRxiv. doi: 10.1101/746420.
Carey MA, Covelli V, Brown A, Medlock GL, Haaren M, Cooper JG, Papin JA, Guler JL (2018). Influential parameters for the analysis of intracellular parasite metabolomics. mSphere 3(2): e00097-18; https://doi.org/10.1128/mSphere.00097-18
Carey MA, Papin JA (2018). Ten simple rules for biologists learning to program. PLOS Computational Biology 14(1): e1005871. https://doi.org/10.1371/journal.pcbi.1005871 - PLOS Computational Biology’s most downloaded and shared article (2018), most viewed (2019)
Medlock GL, Carey MA, McDuffie DG, Mundy MB, Giallourou N, Swann JR, Kolling G, Papin JA (2018). Metabolic mechanisms of interaction within a defined gut microbiota. Cell Systems. https://doi.org/10.1016/j.cels.2018.08.003 - Most viewed Cell Systems paper for 3 months.
Carey MA, Papin JA, Guler JL (2017) Novel Plasmodium falciparum metabolic network reconstruction identifies shifts associated with clinical antimalarial resistance. BMC genomics 18(1), 543. https://doi.org/10.1186/s12864-017-3905-1
Carey MA, Ho ES (2017). A transcriptome study of Borrelia burgdorferi infection in murine heart and brain tissues. Journal of Young Investigators 33(1). https://doi:10.22186/jyi.33.1.28-41
Higgins MJ, Serrano A, Boateng KY, Parsons VA, Phuong T, Seifert A, Ricca JM, Tucker KC, Eidelman AS, Carey MA, Kurt RA (2016). A Multifaceted role for Myd88-Dependent signaling in progression of murine mammary carcinoma. Breast cancer: basic and clinical research 10, BCBCR. S40075.
Burgess SL, Buonomo E, Carey M, Cowardin C, Naylor C, Noor Z, Wills-Karp M, Petri WA (2014). Bone marrow dendritic cells from mice with an altered microbiota provide interleukin 17A-dependent protection against Entamoeba histolytica colitis. MBio 5(6), e01817. https://doi: 10.1128/mBio.01817-14